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… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis thaliana. Using a coupled …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary … bacteria, fungi, algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often involved in …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological … genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables … microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, environmental …

… The purpose of this policy is to establish communication norms around JGI contributions, … ensure that all contributors to a research project are appropriately recognized and credited for their work, … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …

… this time. Let’s jump right in. — DAN: So secondary metabolites. I kind of inferred through the stories I told you about geosmin, which is a bacterial sacred metabolite, and ergot alkaloids come from … Frankia . And so the Frankia are bacteria that live in the root nodules of plants. And these guys were sequenced, and …

… As a National User Facility, the JGI serves more than 2,500 users that predominately come from the public sector: academic and government institutions — with … characterized.  Our metabolomics platform delivers rich metabolite profiles from diverse biological and …

… have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life cycle, and embeds … processes. This allows us to provide diverse scientific communities with large amounts of standardized high-quality …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … JGI products and services while nurturing a fresh cohort of users Reach the next generation of genome scientists and …

… metabolites. So knowing, OK, which metabolites are actually associated with these gene clusters, or to activity? So if … Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And so yeah, we use antiSMASH to identify … of a plant, so the bacteria living on and inside the roots are protecting the plants against pathogens. So …

… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine … viruses and cellular life, providing unique insights into viral evolution and complexity, and encode for a treasure …

… a check-up on me. And I wonder how that intersects with bacterial bioprospecting that is often done, where we’re … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as … in bacteria as well. Yeah. DAN UDWARY: Yeah. Yeah, common root.  ALISON TAKEMURA: And so is that how your ethnobotany …

… The SMAC is chartered by the Secondary Metabolites Program Head and report back to them. The Committee is chartered to render advice, guidance, and counsel on the effective …