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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … of data produced at the facility, provided this is done in a timely fashion. The publications resulting from …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great … I was talking to an organic chemistry professor about some reaction and why the stereochemistry was that way. And he …

… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … department at the University of Utah, so that makes him one of Jackie’s colleagues. Aaron is doing some cool stuff … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … of primary metabolism as being the standard set of shared reactions that most living organisms share – have together. … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… … DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society … biocatalysts – that is, using enzymes to do chemical reactions. Obviously, in my work, in genome mining, we have …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … which is a short peptide and all of these enzymes that do reactions on that peptide. Often, the reactions that take … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … working with the JGI 120 genomes claimed (or about one per student) Seven student-drafted articles accepted …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … nice map of the Aflatoxin biosynthetic gene cluster and its reaction pathway can be found in Yu et al, APPLIED AND …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, … that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This …