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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom …
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Partnerships: Adopt-A-Genome
… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical … for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  … technologies that address challenges in the sourcing, recovery, and utilization of critical minerals and …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of …
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Publications
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …
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Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
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Micro-Scale Applications Group
… The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … technology in order to enhance the quality of single-cell genomes and directly link functional information with … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …
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Industry Engagement Program
… JGI serves more than 2,500 users that predominately come from the public sector: academic and government institutions … joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … Our Biodesign platform enables users to test hypotheses via designed and assembled physical DNA constructs that can …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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