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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … and single cells. This effort uncovers novel genes, protein families, and pathways, enhancing our understanding … the functional capability of microbial communities based on their metagenome sequence, in the context of …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: …

… of natural products, Professor Bill Fenical from Scripps Institution of Oceanography in San Diego. Bill is a pioneer … really, all over the world. We used ships. We used land-based marine labs. We wrote cooperative grants with people … molecules that bound inside the cells to tubulin, these proteins that allow the cells to divide. We found all sorts …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … on this: Most of the machinery in any living organism are proteins, which are made up of chains of amino acids. … you’d like to read more about this, I highly recommend his publication last year, “The Biosynthetic Diversity of the …

… resilience. The program’s discoveries support a plant based bioeconomy where plants are a major source of chemical … including deep learning algorithms for gene annotation and protein folding models, to improve the accuracy of … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

Research in the Woyke laboratory focuses on the utility of … an era of ‘homology creep’, function prediction as purely based on annotation may not be sufficient. A more recent … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product … and each fraction is sequenced Combined assembly of related fractions originating from the same sample, …

… itself medicine, but the coding within the DNA codes for proteins that do the chemistry that put molecules together … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … families of genes that it searches for and uses a rule-based system that classifies the things that it finds into …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal … PacBio sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE … Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† Actual Operation = 69 …

… guy named Matt Bogyo in grad school synthesizing activity based probes which are basically molecules that will … more structural diversity — so that one uses acyl carrier proteins as co-substrate. So the other ones they use CoA … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …