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… such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of … Genome Institute ( https://ror.org/04xm1d337 ) and the Environmental Molecular Sciences Laboratory ( …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… technology in order to enhance the quality of single-cell genomes and directly link functional information with … internal analytical standards to accurately measure environmental microbiome activity levels.This functional … and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling strategies …

… to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by sequencing large populations … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to improve …

… the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence Assembly, annotation ( …

… and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in … and targeted gene searches to expand representation of uncultivated microbial lineages. Charting viral ‘dark …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

… provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the project … for Structural Molecular Biology . … Accessing NEON’s Environmental Sample Archives, Applying JGI and EMSL Omics …

… agricultural productivity. Research spans diverse areas — from understanding how terrestrial plants and phytoplankton … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …