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… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire … The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … The DNA Synthesis Program plays a central role in advancing …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … The Program also aims to build a global-scale catalog of viral, microbial, and microeukaryote genomes and mobile …

… strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question in …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic … genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … and complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. …

… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully executed, the new User … and delays on the work. The transfer of a proposal from one commercial institution to a new commercial …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, … talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in ongoing …

… wise maybe, what genome mining is, then, is looking at DNA sequence and trying to find the things that you want to … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … machine learning really would help distinguish and predict novel gene clusters. DAN UDWARY: Yeah, it certainly could. …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … The program provides high-quality, large-scale genomic data to advance microbial research that drives …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw …