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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … ) and the National Energy Research Scientific Computing Center (NERSC) ( https://ror.org/05v3mvq14 ), …

… group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information … thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables … plants and soils. Through a combination of experimental workflows and computational analysis, JGI scientists are … including state-of-the-art instrumentation and informatic approaches.By bridging genomics with metabolomics, the …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … work in the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  … most pressing challenges. … Exploration of phylogenomic novelty: Advances in metagenomic sequencing, assembly and …

… time called Genbiotics , which was a large program to find novel antibiotics. And this particular project focused … were– they were working well, but they were not really as scalable as needed to make this a software for everyone to … we noticed that BiG-SCAPE was very scalable compared to approaches before that. But when you wanted to include more …

… of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is creating … of the functional dark matter as well as the development of novel methods to enable large-scale comparative analysis, … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … Nature Communications. 9 (1), 1-9 Schulz et al. (2017) Towards a balanced view of the bacterial tree of life. …

The JGI leverages its existing partnerships and develops others providing complementary … facilities (e.g., the National Energy Research Scientific Computing Center (NERSC) and data infrastructure … Data Collaborative (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … machine learning really would help distinguish and predict novel gene clusters. DAN UDWARY: Yeah, it certainly could. You can imagine lots of different approaches to sort of tackling this kind of a problem that …