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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … to reach out to your Project Manager or JGI Science Program lead(s) to discuss authorship at any point. Specifically, …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants … influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including …
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Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stress
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Publications
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s also a really … there’s hot spots of really potent antibiotics. There’s cold spots where the pathogens are taking over and …
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Natural Prodcast Episode 16: Marcy Balunas
… And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … garden ant as well as the American honeybee. And so I have multiple opinions which I’m never short of but. In terms of … you try to tackle that? Would you do that through metabolomics or sequence or both or–?  MARCY: So we do so much more …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … ACADEMIC, NON-PROFIT or COMMERCIAL PROPOSALS with MULTIPLE COLLABORATORS: The submitting researcher’s home …
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FICUS
… researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … For accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by … provides customized analysis, the JGI also participates in publication of results. …
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Microbiome Data Science Team
… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Data Science and analysis of Big Data. The Research Team   … The research efforts of the group have concentrated in demonstrating the power of …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … accepted FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … And he tells us about forthcoming efforts in paired-omics data sets and seeking to interpret function from BGCs. … encoded by them. Well, they had come out over actually multiple decades of time. But still to be able to use those …
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