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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, …

… large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to … this program, the DOE aims to advance genome science-based scientific research from a broad range of disciplines. … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product … and improved.  Semi-manual. Assembly, annotation ( IMG ), methylation analysis 131/176 Microbial Single Particle Sort …

DAN UDWARY: You’re listening to the Department of Energy … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … families of genes that it searches for and uses a rule-based system that classifies the things that it finds into …

Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into … may be submitted to the JGI at any time using a simple web-based form and are reviewed annually. For accepted …

Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and … This includes linking strain-level genetic variation to ecological niche adaptations.  Single cell sequencing … the functional capability of microbial communities based on their metagenome sequence, in the context of …

… that I’m fascinated to learn more about. He works with methylotrophs, which are a group of carbon-fixing bacteria … guy named Matt Bogyo in grad school synthesizing activity based probes which are basically molecules that will … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… (FICUS) initiative was established in 2014 to encourage and enable researchers to more easily integrate the … researchers had to apply to each facility with separate review schedules and selection processes, making it … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …

… on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated … A. et al. (2016)  Metagenomics uncovers gaps in amplicon-based detection of microbial diversity . Nature Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …