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… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … The Metagenome Program focuses on the high-throughput sequencing … in natural environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … applications. By recovering population genomes from metagenomes, we gain insights into microbial interactions, … high-throughput SIP (Nuccio et al. 2022) and terabase-scale metagenome combined assemblies (Hofmeyr et al. 2020) we are …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in ongoing …

… to a research project are appropriately recognized and credited for their work, while also adhering to the … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under … genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving … of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics group . Research Team …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes … set of MAGs to date. Here, at JGI, we took more than 10,000 metagenomes, many of which were sequenced at JGI, and some …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA … data, coupled with recent computational technology advances in management, processing and visualization of “big data,” and … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to …

… Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm …

… primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is … Yeah. There’s so much to do there especially looking at metagenomes. So we’re actually eager soon to also work on … especially if you want to know to which metagenome assembled genomes within a metagenome they belong and to …

… to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and enabling state-of-the-art sample processing and sequencing capabilities. The Genomic Technologies Group, … profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a …