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The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes based … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; represented by …

Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, cloned into vector of … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …

… there have been huge advances in both. The cool thing about genomes is you can, well, if your assembly is good, you can … is a whole bunch of information that maybe never makes its publication. And these are little tips, you know, how to … lots of great and fascinating seminars, focusing on actinobacterial biology and chemistry. …

… the rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … million BGCs in the database on the release, and that’s the bacterial stuff. Could be more. [CHUCKLES] I’m not quite …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got … cluster with me because it turns out that oftentimes in bacterial genomes if you have a quorum sensing system or the … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …