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The Fungal & Algal Program explores the vast diversity of fungi … cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

Undergraduate Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology … … The Mycocosm portal supports the annotation, comparative analysis, and distribution of fungal genome datasets. It … and publicly available datasets encompassing a wide array of fungal genomes, along with curated metadata to …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … and seeking to interpret function from BGCs. It’s a long, wide ranging conversation and I’m so happy we got the chance …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually … it is that secondary metabolism is ancient and, therefore, widespread. So if secondary metabolism was there when– and …

… data-driven methods, the program equips researchers worldwide to tackle challenges in energy, agriculture, and … high quality genomes and annotations across the plant kingdom to enable advanced methodologies for determining … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all … take to improve on the data side of things and sequencing analysis side of things to really start to be able to … and to understand their evolution. It was a fun, wide-ranging conversation, where we talked about our shared …