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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … Genome Portal. You can navigate to the proposal info page using any of the below methods: Search the Genome Portal …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … for addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … reference genomes of bacterial and archaeal isolates expand coverage of the tree of life.  Nature Biotechnology … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several … metadata, around the world. … NMDC is a community-driven national effort aimed to develop standards, …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … for comparative analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & …

… by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for … program seeks to expand our understanding of algal biology using genomics and multi-omics by working with research labs …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … be. That’s still largely homology based, but then you’re using kind of a black box for the rule set. (Like antiSMASH, …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … Pool of variant libraries; sample sequencing to determine coverage of variants depends on project Fungal Minimal Draft … Fungal Standard Draft Whole genome shotgun sequencing using long-read sequencing. Exact library types and quality …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with … advancing the bioeconomy, environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is … in your custom Python applications but highly recommend using the workflow in  GNPS2 .   … In support of user …