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… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …

… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …

… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …

… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … that — fingers crossed, tenure relying on this — antiSMASH version 1 comes out. The reviewers were not kind to my … of biosynthetic gene clusters. But with all of the other IMG kind of hooks into IMG’s data. IMG being Integrated …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …

… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent updates were approved by the DOE to …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed … of Biosynthetic Clusters , which is a subsection of the IMG data portal , which is a larger portal for microbial …

… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … Environmental transcript sequence Assembly, annotation ( IMG/M ), mapping 273/273 Metagenome Cell Enrichments …