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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …

… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … reports and tracking statuses.  Please follow the steps outlined below. Click the drop-downs to learn more about … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …

… we have is that if you have in these molecular networks, nodes that are not so highly diversified, for example, we … to find the clueless ones. ALISON TAKEMURA: Is there just identifying these gene clusters that gets you to– I guess, … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … a network where two– where every gene cluster would be a node, and they would be connected by edges if the gene … is definitely the most comprehensive set of tools for identifying gene clusters. There’s nothing that is quite as …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … educators working with the JGI 120 genomes claimed (or about one per student) Seven student-drafted articles accepted …

… of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser University in British Columbia, … products field as it relates to structure elucidation and genome mining, and how we might start to better connect … initial work was very labor intensive. But it gave us a basal training set we could use to build more sophisticated …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … are definitely an expert in natural products. And I’ve always known you as “the enediyne guy”. And so enediynes are …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …

… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

The Metagenome Program uses advanced sequencing technologies to … that support user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional …