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… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … necessary to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… Below is a brief description of the process needed to prepare and ship samples for … protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at … collection and storage (from PacBio) Best practices for High Molecular Weight DNA extraction and quality control …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial … and ecosystem management. The program aims to generate high-quality genomic datasets, particularly for uncultivated …

… through end-to-end automation — and further advancing sequence applications, single cell genomics, biodesign, and …   Overview of sequencing products The JGI operates highly scaled short- and long-read sequencing pipelines. This includes advanced sample management (quality assurance/quality control [QA/QC]), large-scale …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … but in subtle ways that affect fitness. And so, doing a high level kind of analysis, you just might not be able to …

… The mission of the Joint Genome Institute is to serve the scientific … scientific discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE … such factors as genome size, polymorphism level, sample quality and availability, etc.   During scientific peer …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism …