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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … by the Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI … A primary purpose of this project is to bring educators from a broad range of …
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Natural Prodcast Episode 16: Marcy Balunas
… I hesitate to make a guess but maybe 50 to 100 different strains and they are in individual tubules.  And so these … And we’ve done some work with those and have a couple of publications out there on the chemistry. There’s so much … metabolism you know those numbers are still actually pretty high in terms of understanding from just sequence gazing …
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Publications
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High phenotypic and genotypic plasticity among strains of the mushroom-forming fungus Schizophyllum commune
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Strain Engineering
… The focus of this group, in recent years, has been to bring … expression and functional exploration.  The developed strains represent an additional phase of user-accessible … into a taxonomically diverse suite of microbial chassis strains for elevated opportunity for expression. Research …
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Protocols
… and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  … Tips for High Molecular Weight DNA extraction: …
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Natural Prodcast Episode 7: Ben Shen
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … so I hope somebody’s going to find them useful! DAN: Among many other things, Ben is maybe best known as an … major discovery from the genome sequencing of this Actino strains, instead of knowing some of the organism can produce …
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Genome sequence of the model mushroom Schizophyllum commune
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   ensuring … .  Many users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, metabolomic, imaging, sensor, and other data … Deputy of Genomic Technologies …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … first described by Stanley and Konopa in 1985, which highlights our skewed understanding of microbial metabolism …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find … Exploring the fascinating world of giant viruses, which challenge our understanding of viral …
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