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Microbial Program
… cycling and inter-organismal interactions. These insights are crucial for addressing key environmental … The program provides high-quality, large-scale genomic data to advance microbial research that drives … interactions: In an effort to gain insights into the interactions between microbial organisms and how …
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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …
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Plant Program
… and anti-pest compounds.  The program is working to expand genomic resources for key plant species, enhancing our … communities affect plant growth and productivity. These insights have the potential to inform strategies that … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Metagenome Program
… that govern ecosystem processes. This research provides insights into microbial diversity and metabolic potential, with … Metagenome Program combines large-scale, time-series metagenomic data with detailed characterization of model systems …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, … and skills necessary to extract meaningful biological insights from sequence data, employing IMG data and tools …
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Metabolomics Program
… of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … microbes, and understanding microbiome interactions. The  insights derived are crucial for advancing the bioeconomy, … metabolomics with genomic data to gain insights into how small molecules function within plants, microbes, …
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DNA Synthesis Program
The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … supports researchers exploring how to convert sequence into functional assessments. The team has a research & … clade-specific orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.  … …
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IMG Group
… and is responsible for the annotation and analysis of (meta)genomic, (meta)transcriptomic, and functional genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … and follow the metadata requirements for integrating data into IMG/M (see IMG/M submission site ). The Integrated …
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Natural Prodcast Episode 7: Ben Shen
… for every episode we put out. I actually put a lot of time into preparing those transcripts, so I hope somebody’s going … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … natural product – they also often surprise us by giving us insights, inspires us to discover the fundamentals and then …
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Publications
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Fungal & Algal Program
… and biogeochemistry. This research helps translate their genomic potential into practical applications, including sustainable biofuels, … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … worked is people who were trying to find gold would go out into the hills. And they knew from example that gold is a … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …
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