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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in … discovering and characterizing giant viruses, which possess genomes and particle sizes that rival those of cellular … to adapt to live in Earth's most extreme environments, from deep-sea oceanic fluids to hypersaline lakes and …

… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host … function of these phage genes is the modulation of their bacterial host to colonize plant roots, as with Arabidopsis …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … we did at WarpDrive was exactly in this kind of a vein. We sequenced in the end about 150,000 genomes, just to look for …

… such datasets. The program also collaborates with isolate collections to complete large-scale sequencing projects, … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial …

… profiling transcription factor binding sites across entire genomes. This technology has been further scaled to a … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … The Metagenome Program focuses on the high-throughput sequencing of …

… While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses … to identify, filter, cluster, annotate, and bin viruses from metagenomes. mSystems 9:e00888-24. … Collect CRISPR spacers from metagenomic reads at scale …