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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …
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Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … genome mining over the years, and we talk about a new publication out of JGI in Nature Biotechnology , for which …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … must have the legal authority to commit your institution or organization to the terms and conditions in the User … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … with AntiSMASH , which is available for analysis of your genomes on the web , or you can download a docker container …
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Publications
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …
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Natural Prodcast Episode 23: Aaron Puri
… DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy …
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Genome evolution in the allotetraploid frog Xenopus laevis
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell … in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … It was unpublished at that point. But people would push out gene clusters maybe once a month at most. Maybe twice a …
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