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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI …

… “Adopt a Genome” is an informal program for faculty to “claim” the … that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This …

Below is a table of standard product offerings, including a description of the product and deliverables as well as … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling …

… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is advancing … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … Dariia et al. (2023)  A standardized quantitative analysis strategy for stable isotope probing metagenomics … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

Below is a brief description of the process needed to prepare and ship … Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? … emails as raw sequence data becomes available, and as analysis is completed. You can view the status of your …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. …