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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Publications
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Strain Engineering
The focus of this group, in recent years, has been to bring generalizable technologies to bacteria, … expression and functional exploration.  The developed strains represent an additional phase of user-accessible …
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Evolutionary Divergence of Marinobacter Strains in Cryopeg Brines as Revealed by Pangenomics
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … ActDES, which is a curated database of actinobacteria for evolutionary studies, and hopefully we can catch him again … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host dynamics in … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains project ), the delineation of … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the … algae, examining both natural populations and engineered strains. This approach allows for the identification of key …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … sequencing projects, including 10,000 Actinomycetota strains and 10,000 type strains. These efforts will provide … families, and pathways, enhancing our understanding of evolutionary diversification and microbial diversity. Learn …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … ALISON TAKEMURA: Hmm. Well, I think, I mean from an evolutionary perspective, I would think that genes that are …
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