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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, … our policy on research data and analysis products produced through all user projects accepted FY22 and later. … Read …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … was our first paper . It was definitely interesting going through the whole process of submitting, getting feedback , …

… and engineered strains. This approach allows for the identification of key functional traits that have direct … of diverse algal genomes, which will be made accessible through the PhycoCosm portal. The Fungal & Algal Program … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …

… sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory … these species. The pangenomes enable the exploration and identification of small and large structural variation — … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and environmental challenges. Through innovative research in synthetic biology, the … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major transition of … Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… to as “data” for the remainder of this policy) produced through all user projects accepted FY22 and later through … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … repositories until the earliest of three points:  (1) publication of the data (including, but not limited to, …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … in one package so that it opened up secondary metabolism identification to anyone who wanted to do it. And it’s been … learning tool that tries to look at patterns of Pfams through a genome and predict where regions of secondary …

… to my submission, they were saying that natural product identification– biosynthetic gene cluster identification was … started during my PhD. And then I actually found out, through a connection of my supervisor, that in parallel, … of hooks into IMG’s data. IMG being Integrated Microbial Genomics at JGI, a large data set of bacterial genomes. And …