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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … following the guidelines below.  … If you use data from 3 or fewer JGI proposals, include those DOIs in the auspice …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium Resources below) PennyPan on Phytozome … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ …

… like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix … biosynthetic gene clusters in your organism that you love dearly and can genetically manipulate. And yeah. And so … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … The sequence tells you a lot, but it doesn’t tell you nearly everything. What I think a lot of people hope for is …

Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … are all available on the JGI’s plant portal  Phytozome v13 . Researchers from the following institutions were also …

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … fungal expression patterns in root cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … new signed paperwork, and getting new documents in place early will prevent disruption and delays on the work. The … completion of work on all approved proposals within 36 months from the approved start date. Additional time …

… us that we want to talk a little bit about. It’s sort of early stages. But I think that is emblematic of some of the … underwater. But thankfully that worked out. And I spent 30, 40 years diving all over the world and bringing samples … have an impact on the fish in terms of sensors? Were they sensing molecules in the ocean like this? And we started to …