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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … Statements Including appropriate tracking numbers is critical to facilitating the tracking of publications and …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … better understand how microbial communities contribute to critical processes such as carbon cycling, nutrient cycling, …
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Microbiome Data Science Team
… plasma.  Nat Commun . 8(1):1424. Sczyrba A, et al. (2017) Critical Assessment of Metagenome Interpretation-a benchmark of … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes …
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Publications
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Critical Assessment of Metagenome Interpretation: the second round of challenges
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … cycling and inter-organismal interactions, which are critical for advancing sustainable solutions in agriculture, … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …
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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … functional genomics since 2012, with a focus on addressing critical energy and environmental challenges. Through … exploring how to convert sequence into functional assessments. The team has a research & development group, a …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … data processing and analysis pipelines for the interpretation of microbiome omics data Developing … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and … somewhat similar group of organisms that I think are critically important to understanding the field of natural …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … data is super important, but access to data is also pretty critical. And I see that over the last few years I think … primer episode, we talked about genome mining through some metagenome associated genomes. And yes, antiSMASH is …
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JGI@25
Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable achievements that showcase our collaborations and … great science that will help solve energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, …
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