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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … of collaborators and users. For example if, by agreement with the collaborator, JGI staff take a lead role in the …

… faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … genome function, particularly those not readily achievable without the capabilities and expertise available at the JGI. …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … DNA in natural environments, the Program provides a snapshot of microbial diversity and their metabolic functional …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … reveals a new bacterial candidate phylum in geothermal springs.  Nature Commun. 7:10476 Varghese NJ,  et al. … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … and exa- scales on multicore and many core architectures with the ultimate objective of facilitating omics-based …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … play a vital role in carbon cycling, biodegradation and biogeochemistry. This research helps translate their genomic … carbon management, and environmental sustainability. Fungi, with million species, are essential for ecosystem …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … of secondary metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … As always, you’ll find transcripts and show notes with links to lots of other resources, especially for these … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …