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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … facility, provided this is done in a timely fashion. The publications resulting from such efforts should specify the …
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Publications
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … to perform computational analysis. IMG/M user interface is designed for use by microbiologists to quickly bridge the … Microbiol Resour Announc.  … Objectives … What is IMG/M … Publications … Access to the microbial genomes and …
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Products
DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product … requests not on this list, or to discuss experimental design for a proposal, we encourage you to contact the … product depend on genome. Selected genomes will be improved based on feasibility and scientific merit Assembly, …
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DNA Synthesis Program
… research in synthetic biology, the program enables the design and synthesis of complex genetic pathways and … projects, including gene synthesis, combinatorial pathway design, and efforts to refactor entire chromosomes, such as … aligning with the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on …
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Synthetic Biology Lab
… our efforts on integrating database mining and sequence design with scaling the production of large, difficult to … of throughput. We also develop methods for efficient QA/QC based on next-generation sequencing technologies including … using phylogenomic driven approaches, and understanding the design principles for successfully engineering pathways to …
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FICUS
… provides customized analysis, the JGI also participates in publication of results. … Proposals for the annual FICUS … briefly describing the project motivation, experimental design, capabilities to be used and DOE mission relevance. … the NEON resource, a network of field research sites designed to collect long-term open access ecological data. …
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DOE Metrics
PacBio sequencing platforms. **Operating Hours target is based on 98% of the total available hours.   FY 2024 DOE … 1,880.818 2,100 2208 105 * Q20 bases — indicates good confidence in the assignment of a base. ** Number of hours a … 45.96 396.866 2100 2208 105 * Q20 bases — indicates good confidence in the assignment of a base. ** Number of hours a …
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Synthesis
Lab : a user science group dedicated to user project design, assembly, and quality control Strain Engineering … tools for workflow management and novel automations for DNA design, assembly and analysis Overview of synthesis products … validate hypotheses generated from mining genomic data by designing and assembling physical DNA constructs that can …
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Plant Program
… resilience. The program’s discoveries support a plant based bioeconomy where plants are a major source of chemical … with the JGI Plant Genome Advisory Committee and DOE, designating a set of JGI plant genomes that are the most … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 23: Aaron Puri
… guy named Matt Bogyo in grad school synthesizing activity based probes which are basically molecules that will … with their target. And so, for example, you could think of designing one of those that can trick an enzyme into … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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User Support
… with JGI scientific and technical experts Project design with Principal Investigator Providing a general … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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