Results
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …
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The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …
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… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …
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The Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the … on Phytozome … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …
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Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not … The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to …
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Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … to completion of standard analysis. Raw data is provided for all sequencing products below. In addition, JGI will … based on feasibility and scientific merit. Arizona Genomics Institute will produce HMW DNA needed for these …
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JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, … scientific discovery. Projects focused on organisms for comparative purposes, on model systems for microbe-microbe …
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… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …
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… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space: The JGI generates … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …
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… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …
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