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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . Research Team    … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …
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Publications
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is … of microbial metabolism towards a minority of cultivated bacteria, still persists to date. Research Team    …
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Metagenome Program
… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their … drive innovations that could advance our understanding of Earth’s ecosystems. …
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Microbiome Data Science Team
… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including …
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Viral Genomics Group
… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … ecosystem-level impacts of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … is obtained. So let’s think about synthesis of an amino acid, like tryptophan. You are not allowing any chemical … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff …
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