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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … Other projects in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …

… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … a particular signal with a particular synthase amino acid sequence we think that can be a great resource for the … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics …