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… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using …

… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM database …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from there, … would have really done a somewhat exhaustive chemical analysis of a bacterium that they’re interested in, usually …

… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … explored to predict microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates …

… And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … tool. It’s the best thing that we have. And its rule-based analysis is second to none. And it’s the most valuable thing … a BGC fragment can be useful in some way if you’re doing comparative analysis. We want to make sure we had everything …

… joined the JGI in 2017, he brought with him 20 years of industry experience — and an opportunity to expand the … National Labs and industry, including User Facilities like the JGI, through its Genesis Mission. Launched in 2025, … and environmental samples by using advanced computer analysis coupled with liquid chromatography mass …

… The User Support Analysis group provides computational analysis for new … We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …