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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … No. DE-AC02-05CH11231) in collaboration with the user community.” … Read this publication policy in full, … our policy on research data and analysis products produced through all user projects accepted FY22 and later. … Read …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … so no programming knowledge and no dedicated compute infrastructure is required to perform computational analysis. … was our first paper . It was definitely interesting going through the whole process of submitting, getting feedback , …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … from environmental samples.  … The IMG/M system serves as a community resource for comparative analysis and annotation …

Program is to develop a deeper understanding of microbial community assembly and microbial interactions, including … and metabolomics data, shedding light on microbial metabolism and activity in natural environments. Integrating … effort aimed to develop standards, processes, and infrastructure for an integrated microbiome data ecosystem. … …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … to confidently assign species to nearly 326 genomes. Through the analysis of cliques, it has also become possible … Integrated Microbial Genomes (IMG) system serves as a community resource for analysis and annotation of genome and …

… and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … everybody uses, is called antiSMASH . And it is another community effort that’s been built up over the years and is … a community effort of putting together the natural product structures that are known. I forget how many structures are …

… sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant Genome Advisory … and function. These species are carefully selected by the community to evenly sample the diversity of the plant … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… which highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still … C., Woyke T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

… and professional expertise to support the global research community in studies of complex biological and environmental … earth, and environmental systems for energy and infrastructure security. The BER research program seeks to … the bioeconomy. Gain a genome-level understanding of plant metabolism, physiology, and growth to develop new bioenergy …