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Partnerships: Adopt-A-Genome
… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Environmental Genomics Group
… and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … to improving our understanding of microbial ecology and metabolism by elucidating the functional potential of …
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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … to find novel functions that may impact microbiome structure and biogeochemical cycles. Research Team    …
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Metagenome Program
… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … Program is to develop a deeper understanding of microbial community assembly and microbial interactions, including …
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Community Science Program
… The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … everybody uses, is called antiSMASH . And it is another community effort that’s been built up over the years and is … a community effort of putting together the natural product structures that are known. I forget how many structures are …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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Plant Program
… soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for … to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet …
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Publications
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Natural Prodcast Episode 12: Nadine Ziemert
… So he could see really into this– so he could look into the structure, really seeing that. And I’m always just looking … fascinating, I think. DAN UDWARY: Yeah, and that was a JGI Community Sequencing Project. You’re right, yeah. NADINE … Usually, in a lot of cases, we still have to go through publications to get proteins, and their functions, and all …
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