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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of …
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CSP Functional Genomics
Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into … to this call may be submitted to the JGI at any time using a simple web-based form and are reviewed annually. For …
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Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … sequence to biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: …
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Publications
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Natural Prodcast Episode 22: Alison Narayan
Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … work as exploring and exploiting biocatalysts – that is, using enzymes to do chemical reactions. Obviously, in my … results that we have with these enzymes, too, so the more robust, the better. JACKIE WINTER: Nice. DAN UDWARY: That …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … about several different pieces of her work, including bacterial quorum sensing and its effects on regulation of … your website that-- speaking of hormones, that you're also using hormones as this chemical communication signal. BETSY …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … laboratory isolation and genome sequencing of underexplored bacterial and archaeal lineages that are important for …
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Synthetic Biology Lab
… synthetic biology applications group. The DNA synthesis and assembly group: Our production group operates as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … interested in:  characterizing novel enzymatic activities using phylogenomic driven approaches, and understanding the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … often the things that suffer first when it comes to genome assembly. Some of the common biosynthetic systems – like a …
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New Lineages of Life Group
… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … Schulz et al. (2020) Advantages and limits of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … program seeks to expand our understanding of algal biology using genomics and multi-omics by working with research labs … is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international …
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