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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any … assembly and engineering strategies for DNA synthesis applications. If JGI personnel contribute substantially to …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … improving soil health, carbon sequestration and bioeconomy applications. The program provides high-quality, large-scale … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of …

DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

The Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of … access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … production, environmental sustainability, and many other applications. By understanding how microbes contribute to … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … recent effort in the Woyke lab is therefore focused on the application of  function-driven single-cell genomics . Here, … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

When submitting sequences to the JGI DNA Synthesis program, please include … well-formed GenBank files. ApE is an open source desktop application written by M. Wayne Davis or commercial options … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … you see that research or those results heading? Toward an application, toward just better understanding fungal …

… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … of natural compounds that support disease resistance, with applications in sustainable agriculture, including the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … with the ultimate objective of facilitating omics-based scientific investigations. Development and maintenance … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …