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… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic …

… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to have a … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

… research project are appropriately recognized and credited for their work, while also adhering to the authorship … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped …

… automation — and further advancing sequence applications, single cell genomics, biodesign, and metabolomics capabilities.    … An assay used for profiling transcription factor binding sites across … high-throughput processing of samples in 96-well plates on automated liquid handler platforms, substantially increasing …

… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major …

… offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource … biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse … way. We also work with our partners to ensure platforms are future-ready for advancements enabled by …

… discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for further science.  … NOTICE The Data Portal application has replaced the JGI Genome Portal . Book a session via the appointment calendar …

… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate … provides customized analysis, the JGI also participates in publication of results. …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … insights from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation …

… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to the  MassIVE repository . Not all products are available for all proposal calls.   Please review the call language … Resequencing SNP and short indel calls, rearrangement detection, population analysis Text file of SNPs (incl …

… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI …