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Publication Policy
… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … JGI Staff: Upon request, JGI staff will provide Users with a list of contributors and their corresponding ORCiD and relevant …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new … Exploring the fascinating world of giant viruses, which challenge our …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … A primary purpose of this project is to bring educators from a broad range of …
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Publications
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … An assay used for profiling transcription factor binding … been further scaled to a multiplexed DAP-seq (multiDAP-seq) method allowing high-throughput processing of samples in …
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A simple, fast, and accurate method of phylogenomic inference
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … The Metagenome Program focuses on the high-throughput sequencing of …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… DAN UDWARY: You’re listening to the Department of Energy … try to, when we do these definitions, try to keep the simplest possible thing to explain it. So I think when I … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, …
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Synthetic Biology Lab
… The Synthetic Biology lab is divided into a DNA synthesis production group and a … as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … enabling ever-higher levels of throughput. We also develop methods for efficient QA/QC based on next-generation …
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Natural Prodcast Episode 9: Roger Linington
… DAN: Welcome back for episode 9 of Natural Prodcast. This … right. ROGER:  That are found that way. And so relatively simple changes like that, I think, will make a really big … hardware, software, new developments in NMR methods, ultra fast methods for acquisition. Things like this new SMART …
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … can really connect what type of evolutionary pressure is simplest. High purifying selection will lead to a highly … Episode Transcript … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated … gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …
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