Publications - DOE Joint Genome Institute

JGI publications for calendar year 2024 appear below, listed alphabetically by author.

Alsup, Tyler A. et al. (2024) Characterization of UbiA terpene synthases with a precursor overproduction system in Escherichia coli. . 10.1016/bs.mie.2024.02.001
Amusat, Oluwamayowa O et al. (2024) Automated annotation of scientific texts for ML-based keyphrase extraction and validation. Database 2024, baae093. 10.1093/database/baae093
Amusat, Oluwamayowa O et al. (2024) Automated annotation of scientific texts for ML-based keyphrase extraction and validation. Database 2024, baae093. 10.1093/database/baae093
Aplakidou, Eleni et al. (2024) Visualizing metagenomic and metatranscriptomic data: A comprehensive review. Computational and Structural Biotechnology Journal 23, 2011-2033. 10.1016/j.csbj.2024.04.060
Aplakidou, Eleni et al. (2024) Visualizing metagenomic and metatranscriptomic data: A comprehensive review. Computational and Structural Biotechnology Journal 23, 2011-2033. 10.1016/j.csbj.2024.04.060
Arahal, David R. et al. (2024) Judicial Opinion 129.. International Journal of Systematic and Evolutionary Microbiology 74(2). 10.1099/ijsem.0.006064
Arahal, David R. et al. (2024) Judicial Opinion 130.. International Journal of Systematic and Evolutionary Microbiology 74(6). 10.1099/ijsem.0.006414
Arahal, David R. et al. (2024) Judicial Opinion 130.. International Journal of Systematic and Evolutionary Microbiology 74(6). 10.1099/ijsem.0.006414
Arthofer, Patrick et al. (2024) A giant virus infecting the amoeboflagellate Naegleria. Nature Communications 15(1), 3307. 10.1038/s41467-024-47308-2
Arthofer, Patrick et al. (2024) A giant virus infecting the amoeboflagellate Naegleria. Nature Communications 15(1), 3307. 10.1038/s41467-024-47308-2
Bálint, Balázs et al. (2024) ContScout: sensitive detection and removal of contamination from annotated genomes. Nature Communications 15(1), 936. 10.1038/s41467-024-45024-5
Baltrus, David A. et al. (2024) Luteibacter mycovicinus sp. nov., a yellow-pigmented gammaproteobacterium found as an endohyphal symbiont of endophytic Ascomycota. International Journal of Systematic and Evolutionary Microbiology 74(5), 006240. 10.1099/ijsem.0.006240
Baltrus, David A. et al. (2024) Luteibacter mycovicinus sp. nov., a yellow-pigmented gammaproteobacterium found as an endohyphal symbiont of endophytic Ascomycota. International Journal of Systematic and Evolutionary Microbiology 74(5), 006240. 10.1099/ijsem.0.006240
Barnes, Elle M. et al. (2024) Abiotic stress reorganizes rhizosphere and endosphere network structure of Sorghum bicolor. Phytobiomes Journal . 10.1094/pbiomes-02-24-0012-r
Barnes, Elle M. et al. (2024) Abiotic stress reorganizes rhizosphere and endosphere network structure of Sorghum bicolor. Phytobiomes Journal . 10.1094/pbiomes-02-24-0012-r
Baroncelli, Riccardo et al. (2024) Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi. GigaScience 13, giae036. 10.1093/gigascience/giae036
Baroncelli, Riccardo et al. (2024) Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi. GigaScience 13, giae036. 10.1093/gigascience/giae036
Barros, Katharina O. et al. (2024) Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces. Biotechnology for Biofuels and Bioproducts 17(1), 20. 10.1186/s13068-024-02467-8
Bayer, Barbara et al. (2024) Metabolite release by nitrifiers facilitates metabolic interactions in the ocean. The ISME Journal: Multidisciplinary Journal of Microbial Ecology 18(1), wrae172. 10.1093/ismejo/wrae172
Bayer, Barbara et al. (2024) Metabolite release by nitrifiers facilitates metabolic interactions in the ocean. The ISME Journal: Multidisciplinary Journal of Microbial Ecology 18(1), wrae172. 10.1093/ismejo/wrae172
Ben Ayed, Amal et al. (2024) Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin. Ecotoxicology and Environmental Safety 270, 115808. 10.1016/j.ecoenv.2023.115808
Berner, Keely et al. (2024) Draft genome sequences of Butyrivibrio hungatei DSM 14810 (JK 615T) and Butyrivibrio fibrisolvens DSM 3071 (D1T).. Microbiology Resource Announcements , e0051724. 10.1128/mra.00517-24
Berner, Keely et al. (2024) Draft genome sequences of Butyrivibrio hungatei DSM 14810 (JK 615T) and Butyrivibrio fibrisolvens DSM 3071 (D1T).. Microbiology Resource Announcements , e0051724. 10.1128/mra.00517-24
Bhat, Aditi et al. (2024) Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria. BMC Microbiology 24(1), 247. 10.1186/s12866-024-03391-5
Bhat, Aditi et al. (2024) Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria. BMC Microbiology 24(1), 247. 10.1186/s12866-024-03391-5
Blow, Matthew J. et al. (2024) Mapping the microbiome milieu. Nature Reviews Microbiology 22(4), 190-190. 10.1038/s41579-024-01019-z
Bowers, Robert M et al. (2024) scMicrobe PTA: near complete genomes from single bacterial cells. ISME Communications 4(1), ycae085. 10.1093/ismeco/ycae085
Bowers, Robert M et al. (2024) scMicrobe PTA: near complete genomes from single bacterial cells. ISME Communications 4(1), ycae085. 10.1093/ismeco/ycae085
Buscaglia, Marianne et al. (2024) Adaptation strategies of giant viruses to low-temperature marine ecosystems. The ISME Journal: Multidisciplinary Journal of Microbial Ecology , wrae162. 10.1093/ismejo/wrae162
Buscaglia, Marianne et al. (2024) Adaptation strategies of giant viruses to low-temperature marine ecosystems. The ISME Journal: Multidisciplinary Journal of Microbial Ecology , wrae162. 10.1093/ismejo/wrae162
Bustos-Diaz, Edder D. et al. (2024) Phylometagenomics of cycad coralloid roots reveals shared symbiotic signals. Microbial Genomics 10(3), 001207. 10.1099/mgen.0.001207
Camargo, Antonio Pedro et al. (2024) Unveiling plasmid diversity in nature. Nature Reviews Microbiology 22(10), 597-597. 10.1038/s41579-024-01093-3
Camargo, Antonio Pedro et al. (2024) Unveiling plasmid diversity in nature. Nature Reviews Microbiology 22(10), 597-597. 10.1038/s41579-024-01093-3
Campos, Miguel et al. (2024) Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass Brachypodium stacei. Molecular Ecology 33(19), e17513. 10.1111/mec.17513
Campos, Miguel et al. (2024) Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass Brachypodium stacei. Molecular Ecology 33(19), e17513. 10.1111/mec.17513
Carhuaricra-Huaman, Dennis et al. (2024) Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths (Bradypus variegatus), the first from a non-human host. PeerJ 12, e17206. 10.7717/peerj.17206
Carhuaricra-Huaman, Dennis et al. (2024) Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths (Bradypus variegatus), the first from a non-human host. PeerJ 12, e17206. 10.7717/peerj.17206
Champagne, Sarah E. et al. (2024) Biocatalytic Stereoselective Oxidation of 2‑Arylindoles. Journal of the American Chemical Society 146(4), 2728-2735. 10.1021/jacs.3c12393
Charon, Justine et al. (2024) Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities. Frontiers in Virology 4, 1371958. 10.3389/fviro.2024.1371958
Charon, Justine et al. (2024) Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities. Frontiers in Virology 4, 1371958. 10.3389/fviro.2024.1371958
Chiarelli, Daniela Prates et al. (2024) Expression and characterization of monofunctional alcohol dehydrogenase enzymes in Clostridium thermocellum. Metabolic Engineering Communications 19, e00243. 10.1016/j.mec.2024.e00243
Chiarelli, Daniela Prates et al. (2024) Expression and characterization of monofunctional alcohol dehydrogenase enzymes in Clostridium thermocellum. Metabolic Engineering Communications 19, e00243. 10.1016/j.mec.2024.e00243
Chodkowski, John L. et al. (2024) Bioactive exometabolites drive maintenance competition in simple bacterial communities. mSystems 9(4), e00064-24. 10.1128/msystems.00064-24
Chodkowski, John L. et al. (2024) Bioactive exometabolites drive maintenance competition in simple bacterial communities. mSystems 9(4), e00064-24. 10.1128/msystems.00064-24
Chuckran, Peter F. et al. (2024) Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology Resource Announcements 13(6), e00322-24. 10.1128/mra.00322-24
Chuckran, Peter F. et al. (2024) Metatranscriptomes of California grassland soil microbial communities in response to rewetting. Microbiology Resource Announcements 13(6), e00322-24. 10.1128/mra.00322-24
Coclet, Clément et al. (2024) MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.. mSystems . 10.1128/msystems.00888-24
Coclet, Clément et al. (2024) MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.. mSystems . 10.1128/msystems.00888-24
Coleine, Claudia et al. (2024) Metagenomics untangles potential adaptations of Antarctic endolithic bacteria at the fringe of habitability. The Science of The Total Environment 917, 170290. 10.1016/j.scitotenv.2024.170290
Colman, Daniel R. et al. (2024) Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution. Nature Communications 15(1), 7506. 10.1038/s41467-024-51841-5
Colman, Daniel R. et al. (2024) Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution. Nature Communications 15(1), 7506. 10.1038/s41467-024-51841-5
Conway, Jonathan M. et al. (2024) Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots. Methods in Molecular Biology 2805, 213-228. 10.1007/978-1-0716-3854-5_15
Conway, Jonathan M. et al. (2024) Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots. Methods in Molecular Biology 2805, 213-228. 10.1007/978-1-0716-3854-5_15
Cook, Ryan et al. (2024) Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages. ISME Communications 4(1), ycae079. 10.1093/ismeco/ycae079
Cook, Ryan et al. (2024) Driving through stop signs: predicting stop codon reassignment improves functional annotation of bacteriophages. ISME Communications 4(1), ycae079. 10.1093/ismeco/ycae079
Coomey, Joshua H. et al. (2024) Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression. Quantitative Plant Biology 5, e5. 10.1017/qpb.2024.5
Coomey, Joshua H. et al. (2024) Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression. Quantitative Plant Biology 5, e5. 10.1017/qpb.2024.5
Covington, Jonathan K. et al. (2024) Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3. Frontiers in Microbiology 15, 1355444. 10.3389/fmicb.2024.1355444
Covington, Jonathan K. et al. (2024) Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3. Frontiers in Microbiology 15, 1355444. 10.3389/fmicb.2024.1355444
Curry, Kristen D et al. (2024) Reference-free structural variant detection in microbiomes via long-read co-assembly graphs. Bioinformatics 40(Supplement_1), i58-i67. 10.1093/bioinformatics/btae224
Curry, Kristen D et al. (2024) Reference-free structural variant detection in microbiomes via long-read co-assembly graphs. Bioinformatics 40(Supplement_1), i58-i67. 10.1093/bioinformatics/btae224
Czajka, Jeffrey J. et al. (2024) Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces. Frontiers in Bioengineering and Biotechnology 12, 1356551. 10.3389/fbioe.2024.1356551
Czajka, Jeffrey J. et al. (2024) Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces. Frontiers in Bioengineering and Biotechnology 12, 1356551. 10.3389/fbioe.2024.1356551
de Mesquita, Clifton P Bueno et al. (2024) Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland. ISME Communications 4(1), ycae040. 10.1093/ismeco/ycae040
de Mesquita, Clifton P Bueno et al. (2024) Disentangling the effects of sulfate and other seawater ions on microbial communities and greenhouse gas emissions in a coastal forested wetland. ISME Communications 4(1), ycae040. 10.1093/ismeco/ycae040
de Mesquita, Clifton P. Bueno et al. (2024) Fungal diversity and function in metagenomes sequenced from extreme environments. Fungal Ecology 72, 101383. 10.1016/j.funeco.2024.101383
de Mesquita, Clifton P. Bueno et al. (2024) Microbial Ecology and Site Characteristics Underlie Differences in Salinity‐Methane Relationships in Coastal Wetlands. Journal of Geophysical Research Biogeosciences 129(6). 10.1029/2024jg008133
de Mesquita, Clifton P. Bueno et al. (2024) Microbial Ecology and Site Characteristics Underlie Differences in Salinity‐Methane Relationships in Coastal Wetlands. Journal of Geophysical Research Biogeosciences 129(6). 10.1029/2024jg008133
de Mesquita, Clifton P. Bueno et al. (2024) Fungal diversity and function in metagenomes sequenced from extreme environments. Fungal Ecology 72, 101383. 10.1016/j.funeco.2024.101383
DeChellis, Antonio et al. (2024) Supercharging Carbohydrate Binding Module Alone Enhances Endocellulase Thermostability, Binding, and Activity on Cellulosic Biomass. ACS Sustainable Chemistry & Engineering 12(9), 3500-3516. 10.1021/acssuschemeng.3c06266
Denison, Elizabeth R. et al. (2024) Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie. mSystems 9(7), e00753-24. 10.1128/msystems.00753-24
Denison, Elizabeth R. et al. (2024) Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie. mSystems 9(7), e00753-24. 10.1128/msystems.00753-24
Dieser, Markus et al. (2024) Seven genome sequences of airborne, bacterial isolates from Antarctica. Microbiology Resource Announcements 13(6), e01129-23. 10.1128/mra.01129-23
Dieser, Markus et al. (2024) Seven genome sequences of airborne, bacterial isolates from Antarctica. Microbiology Resource Announcements 13(6), e01129-23. 10.1128/mra.01129-23
Doré, Hugo et al. (2024) Targeted hypermutation of putative antigen sensors in multicellular bacteria. Proceedings of the National Academy of Sciences of the United States of America 121(9), e2316469121. 10.1073/pnas.2316469121
Dziuba, Marcin K. et al. (2024) Phylogeny, morphology, virulence, ecology, and host range of Ordospora pajunii (Ordosporidae), a microsporidian symbiont of Daphnia spp.. mBio 15(6), e00582-24. 10.1128/mbio.00582-24
Dziuba, Marcin K. et al. (2024) Phylogeny, morphology, virulence, ecology, and host range of Ordospora pajunii (Ordosporidae), a microsporidian symbiont of Daphnia spp.. mBio 15(6), e00582-24. 10.1128/mbio.00582-24
Eichfeld, Ruben et al. (2024) Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts. New Phytologist . 10.1111/nph.20080
Eichfeld, Ruben et al. (2024) Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts. New Phytologist . 10.1111/nph.20080
Eloe-Fadrosh, Emiley A. et al. (2024) A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics. Methods in Molecular Biology 2802, 587-609. 10.1007/978-1-0716-3838-5_20
Eloe-Fadrosh, Emiley A. et al. (2024) A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics. Methods in Molecular Biology 2802, 587-609. 10.1007/978-1-0716-3838-5_20
Espina, Mary Jane C. et al. (2024) Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean. The Plant Journal . 10.1111/tpj.17026
Espina, Mary Jane C. et al. (2024) Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean. The Plant Journal . 10.1111/tpj.17026
Fadum, J. M. et al. (2024) Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics. mSystems 9(2), e01059-23. 10.1128/msystems.01059-23
Feitosa-Junior, Oseias R. et al. (2024) The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones. Metabolites 14(2), 82. 10.3390/metabo14020082
Felipe Benites, L. et al. (2024) Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Communications Biology 7(1), 312. 10.1038/s42003-024-05931-1
Felipe Benites, L. et al. (2024) Hot springs viruses at Yellowstone National Park have ancient origins and are adapted to thermophilic hosts. Communications Biology 7(1), 312. 10.1038/s42003-024-05931-1
Feng, Xuehuan et al. (2024) Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature Genetics 56(5), 1018-1031. 10.1038/s41588-024-01737-3
Feng, Xuehuan et al. (2024) Genomes of multicellular algal sisters to land plants illuminate signaling network evolution. Nature Genetics 56(5), 1018-1031. 10.1038/s41588-024-01737-3
Ferrinho, Scarlet et al. (2024) Compendium of Metabolomic and Genomic Datasets for Cyanobacteria: Mined the Gap. Water Research 256, 121492. 10.1016/j.watres.2024.121492
Ferrinho, Scarlet et al. (2024) Compendium of Metabolomic and Genomic Datasets for Cyanobacteria: Mined the Gap. Water Research 256, 121492. 10.1016/j.watres.2024.121492
Fong, Allison A. et al. (2024) Overview of the MOSAiC expedition: Ecosystem. Elementa: Science of the Anthropocene 12(1). 10.1525/elementa.2023.00135
Fong, Allison A. et al. (2024) Overview of the MOSAiC expedition: Ecosystem. Elementa: Science of the Anthropocene 12(1). 10.1525/elementa.2023.00135
Freyria, Nastasia J. et al. (2024) Stress responses in an Arctic microalga (Pelagophyceae) following sudden salinity change revealed by gene expression analysis. Communications Biology 7(1), 1084. 10.1038/s42003-024-06765-7
Freyria, Nastasia J. et al. (2024) Stress responses in an Arctic microalga (Pelagophyceae) following sudden salinity change revealed by gene expression analysis. Communications Biology 7(1), 1084. 10.1038/s42003-024-06765-7
Gomez-Gutierrrez, Sandra V. et al. (2024) Comparative genomics of the extremophile Cryomyces antarcticus and other psychrophilic Dothideomycetes. Frontiers in Fungal Biology 5, 1418145. 10.3389/ffunb.2024.1418145
Gomez-Gutierrrez, Sandra V. et al. (2024) Comparative genomics of the extremophile Cryomyces antarcticus and other psychrophilic Dothideomycetes. Frontiers in Fungal Biology 5, 1418145. 10.3389/ffunb.2024.1418145
Graham, Emily B. et al. (2024) A global atlas of soil viruses reveals unexplored biodiversity and potential biogeochemical impacts. Nature Microbiology 9(7), 1873-1883. 10.1038/s41564-024-01686-x
Graham, Emily B. et al. (2024) A global atlas of soil viruses reveals unexplored biodiversity and potential biogeochemical impacts. Nature Microbiology 9(7), 1873-1883. 10.1038/s41564-024-01686-x
Greenblum, Sharon et al. (2024) Microbial adaptability in changing environments. Nature Reviews Microbiology 22(6), 327-327. 10.1038/s41579-024-01046-w
Greenblum, Sharon et al. (2024) Microbial adaptability in changing environments. Nature Reviews Microbiology 22(6), 327-327. 10.1038/s41579-024-01046-w
Grones, Carolin et al. (2024) Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics. The Plant Cell 36(4), 812-828. 10.1093/plcell/koae003
Grosjean, Nicolas et al. (2024) A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nature Communications 15(1), 3167. 10.1038/s41467-024-47486-z
Grosjean, Nicolas et al. (2024) A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nature Communications 15(1), 3167. 10.1038/s41467-024-47486-z
Haddad Momeni, Majid et al. (2024) Insights into the action of phylogenetically diverse microbial expansins on the structure of cellulose microfibrils. Biotechnology for Biofuels and Bioproducts 17(1), 56. 10.1186/s13068-024-02500-w
Haddad Momeni, Majid et al. (2024) Insights into the action of phylogenetically diverse microbial expansins on the structure of cellulose microfibrils. Biotechnology for Biofuels and Bioproducts 17(1), 56. 10.1186/s13068-024-02500-w
Haghani, Nadia B. et al. (2024) Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection. Microbiology Spectrum 12(8), e00169-24. 10.1128/spectrum.00169-24
Haghani, Nadia B. et al. (2024) Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection. Microbiology Spectrum 12(8), e00169-24. 10.1128/spectrum.00169-24
Harder, Christoffer Bugge et al. (2024) Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations. Cell Genomics 4(7), 100586. 10.1016/j.xgen.2024.100586
Harder, Christoffer Bugge et al. (2024) Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations. Cell Genomics 4(7), 100586. 10.1016/j.xgen.2024.100586
Hartman, Wyatt H. et al. (2024) Multiple microbial guilds mediate soil methane cycling along a wetland salinity gradient. mSystems 9(1), e00936-23. 10.1128/msystems.00936-23
Healey, A. L. et al. (2024) The complex polyploid genome architecture of sugarcane. Nature , 1-7. 10.1038/s41586-024-07231-4
Hiraoka, Yoko et al. (2024) Development and Assessment of SNP Genotyping Arrays for Citrus and Its Close Relatives. Plants 13(5), 691. 10.3390/plants13050691
Hofmeyr, Steven et al. (2024) Exabiome: Advancing Microbial Science through Exascale Computing. Computing in Science & Engineering PP(99), 1-8. 10.1109/mcse.2024.3402546
Hofmeyr, Steven et al. (2024) Exabiome: Advancing Microbial Science through Exascale Computing. Computing in Science & Engineering PP(99), 1-8. 10.1109/mcse.2024.3402546
Howard-Varona, Cristina et al. (2024) Environment-specific virocell metabolic reprogramming. The ISME Journal: Multidisciplinary Journal of Microbial Ecology , wrae055. 10.1093/ismejo/wrae055
Hu, Zhijuan et al. (2024) Engineered Biosynthesis and Anticancer Studies of Ring-Expanded Antimycin-Type Depsipeptides. ACS Synthetic Biology 13(5), 1562-1571. 10.1021/acssynbio.4c00193
Hu, Zhijuan et al. (2024) Engineered Biosynthesis and Anticancer Studies of Ring-Expanded Antimycin-Type Depsipeptides. ACS Synthetic Biology 13(5), 1562-1571. 10.1021/acssynbio.4c00193
Jensen, Rasmus O. et al. (2024) Phylogenomics and genetic analysis of solvent-producing Clostridium species. Scientific Data 11(1), 432. 10.1038/s41597-024-03210-6
Jensen, Rasmus O. et al. (2024) Phylogenomics and genetic analysis of solvent-producing Clostridium species. Scientific Data 11(1), 432. 10.1038/s41597-024-03210-6
Jiao, Jian-Yu et al. (2024) Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments. Microbiome 12(1), 123. 10.1186/s40168-024-01836-7
Jiao, Jian-Yu et al. (2024) Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments. Microbiome 12(1), 123. 10.1186/s40168-024-01836-7
Jiménez, Idoia et al. (2024) In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case. Current Research in Biotechnology 8, 100244. 10.1016/j.crbiot.2024.100244
Jiménez, Idoia et al. (2024) In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case. Current Research in Biotechnology 8, 100244. 10.1016/j.crbiot.2024.100244
Jo, Seohyun et al. (2024) Unlocking saponin biosynthesis in soapwort. Nature Chemical Biology , 1-12. 10.1038/s41589-024-01681-7
Jo, Seohyun et al. (2024) Unlocking saponin biosynthesis in soapwort. Nature Chemical Biology , 1-12. 10.1038/s41589-024-01681-7
Kangi, Emel et al. (2024) A multi-omic survey of black cottonwood tissues highlights coordinated transcriptomic and metabolomic mechanisms for plant adaptation to phosphorus deficiency. Frontiers in Plant Science 15, 1324608. 10.3389/fpls.2024.1324608
Kangi, Emel et al. (2024) A multi-omic survey of black cottonwood tissues highlights coordinated transcriptomic and metabolomic mechanisms for plant adaptation to phosphorus deficiency. Frontiers in Plant Science 15, 1324608. 10.3389/fpls.2024.1324608
Kim, Youngchang et al. (2024) Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications Chemistry 7(1), 160. 10.1038/s42004-024-01242-y
Kim, Youngchang et al. (2024) Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications Chemistry 7(1), 160. 10.1038/s42004-024-01242-y
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