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Natural Prodcast Episode 1: The Primer, Part 1
… for the US Department of Energy Joint Genome Institute, or JGI. JGI is a DOE Office of Science User Facility located at … is. The first three episodes are what we’re calling a Primer. We wanted to try and give a general audience some of … of that. So first, put a picture in your head. It’s a warm summer day, it’s been dry for a while maybe it hasn’t rained …
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Natural Prodcast Episode 3: The Primer, Part 3
… to listen to the 3rd and final part of Natural Prodcast’s “Primer” episodes. This IS the third part, so if this is the … state of things, and what we’re hoping to accomplish at JGI in this area. If this series of podcast episodes has … If you have suggestions for others feel free to let me know by emailing jgi[email protected], or reaching out on …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… of Natural Prodcast. This first episode up is another primer episode. These are episodes where Alison and I talk … to the California gold rush. And we’ll talk about a new JGI paper that’s just come out where I got the chance to do … looking forward to getting them out to you all. But for now, here is episode 10 of Natural Prodcast, the primer on …
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Natural Prodcast Episode 2: The Primer, Part 2
… episode of the Natural Prodcast. This is part 2 of our “primer” episode, so if you ended up here somehow without … I think we can identify most secondary metabolism pathways now, but there’s still almost certainly unusual things that … have that goal. That’s not as much our goal here at the JGI – we are not a medicinally focused organization. And so, …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a … discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a single investment will … Download plant, algal, fungal and microbial genomes and …
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Natural Prodcast Episode 18: A CSP Primer
… with my co-host Alison Takemura, who’s moved on from JGI to do real journalism, and we wish her all the best. … about whether and how they can work with the JGI, and, you know, I’m always really happy to talk to anybody about this, … talk to us. There’s information on the website. I’m always available. If there are technical questions on the proposal …
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DOE Metrics
… **Operating Hours target is based on 98% of the total available hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators … a week that sequencing machines are producing data.   FY 2009 Summary Quarter Total Bases (Billions) Total Bases …
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Natural Prodcast Episode 11: Marnix Medema
… you were supposed to visit us in the Netherlands early this summer, then it was– well, I think the day your visit was … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is … I’m going to start. We talked about this when we did the primer episode, we talked about genome mining through some …
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Who We Are
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence … staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and … with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable … solve energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references dozens of …
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Natural Prodcast Episode 7: Ben Shen
… think his energy is infectious. DAN: I’ll say up front that JGI recently started collaborating with Ben and his group to … that comes across in the interview. If you listened to the Primer episodes, then you heard me talk about JGI’s Earth … drug called Mylotag. Wyeth was later acquired by Pfizer in 2009. So, a simple mistake, but I’m happy to be able to …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. All data is made publicly available in accordance with  JGI’s Data Policy . In cases …
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