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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute … working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … the post-genome computational analysis at HudsonAlpha. … Jeremy Schmutz is the Plant Science Program Head at the JGI. …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, …
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Natural Prodcast Episode 10: A Primer on Genome Mining
DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes …
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Sequencing Technologies
The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE users. Adopting the …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI resources, as well as target … & Agreements Analyst Neil Byers, JGI Science Impact Analyst Jeremy Greeter, Berkeley Lab IPO Tech Commercialization team …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize … So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have … help solve energy and environmental challenges. Maximizing soybean yield is critical to energy independence in the U.S. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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