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CSP Large Scale Call
The Community Science Program Large Scale Call is focused on genomic science projects that address … the areas of special emphasis that are listed in the call and leverage the diversity of JGI technical and … All proposals will be externally peer-reviewed for scientific merit, DOE mission relevance, proposed data …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research initiatives new to the JGI. … should not exceed 3 Tb in total. Proposals for this call may be submitted at any time as brief white …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … . Not all products are available for all proposal calls.   Please review the call language carefully to ensure … coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome shotgun …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … genomes claimed (or about one per student) Seven student-drafted articles accepted with over 20 more in draft Efforts …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to … in publication of results. … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda … File There are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics … is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP … Investigators with DOE mission-relevant projects that call for expansive sequencing, synthetic biology and …
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Webinars on Offerings & Capabilities
… that can help you through the submission process by better understanding the capabilities and resources available for your project. Watch all the webinars here . You can find … of the Advanced Photon Source when applying to the FICUS call. (Feb. 21, 2024) More JGI webinars below …
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FICUS-NERSC/KBASE
… discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in biological data science as part of the … initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather proposals are …
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Microbial Program
… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … of the microbial product catalog : Beyond minimal draft and improved draft microbial genomes the program … featuring the largest collection of plasmids automatically identified from genomes, metagenomes, and …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … research from a broad range of disciplines. Three calls fall under the umbrella of our CSP: The Large Scale call is for expansive projects that leverage a range of JGI …
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Sequencing Technologies
… significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They apply Lean Six Sigma practices to … and development approaches, testing various platforms to see what works best for applications. The team …
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