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Sugarcane was the last major crop without a reference quality genome and now crop researchers can work … enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … commercial options include SnapGene . … How To Use ApE To save your ApE file as a Genbank file, simply go to File -> …

The Sequencing Technologies Group applies cutting edge molecular capabilities and state-of-the-art … output while significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for …

… secondary metabolism.  DAN: Hey there, and welcome to the first episode of Natural Prodcast. First, maybe, a little … that. So here we are. This is the first episode, and at the same time I’m going to release 5 other episodes so you can … recorded the Primer as a much longer conversation, which I cut into more digestable pieces. If you’re an expert in the …

… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … variants with sample sequencing to predict the number of successful variants made depends on project DNA Synthesis … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment …

… brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking statuses.  Please … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… if you ended up here somehow without having listened to the first part, you might be a little lost, and I’d suggest you … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have … of these little white spots around, and those are Streptococcus bacteria – a kind of bacteria that you know, causes …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal …

… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … to peer review process, conveys responsibility and accountability Promote utilization of JGI products and … Matt Escobar,  CSU San Marcos          "This was our first paper . It was definitely interesting going through …

Prodcast. It’s been about a month now since we dropped our first six episodes, and now after gathering some feedback … delivery mechanism. So, the polymer structure has specific preferences to cancer cell lines. So, that was introduced in … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …

… back for our second season of Natural Prodcast. This first episode up is another primer episode. These are … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … from the GEM catalog (in green) and previously existing reference genomes (in gray). Around the phylogenetic tree, …