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When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

Sugarcane was the last major crop without a reference quality genome and now crop researchers can work … enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …

… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment … For counting: text file of gene counts (mapped against reference transcriptome), DGE, alignment files 134/134 Viral …

… pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal … based on their metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. … …

… in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … builds upon thousands of microbial genomes that have been sequenced by the JGI though not formally analyzed or … Matt Escobar,  CSU San Marcos          "This was our first paper . It was definitely interesting going through …

… if you ended up here somehow without having listened to the first part, you might be a little lost, and I’d suggest you go back and check the first episode out. This one continues the introductory … live in the root nodules of plants. And these guys were sequenced, and you can see that different Frankia have …

… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other … users, collaborators and JGI together aim to publish the first analysis of data produced at the facility, provided … it is best practice for those individuals to appear as first and/or senior authors of the paper. Auspice Statements …

… cultivated representatives. The “Great Plate-Count Anomaly” first described by Stanley and Konopa in 1985, which … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … phylogenetic relationships and to provide valuable reference genomes in under-populated areas of the tree of …

… secondary metabolism.  DAN: Hey there, and welcome to the first episode of Natural Prodcast. First, maybe, a little bit of background. My name is Dan … what JGI can do to help that. So here we are. This is the first episode, and at the same time I’m going to release 5 …