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Natural Prodcast Episode 13: Francisco Barona Goméz
… metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our little section … a bit embarrassed that we recorded this conversation about 10 months ago. I was pretty green at the time and had some … by bacterial or fungal metabolism by microbes, will have a functional role. We started from that. Evolution doesn’t …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… getting them out to you all. But for now, here is episode 10 of Natural Prodcast, the primer on genome mining. Hey, … Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome …
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Natural Prodcast Episode 23: Aaron Puri
… like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix … expression hosts like maybe in many fields now like in cyanobacteria or even [ Streptomyces ] coelicolor you’ll see … acyl-homoserine lactone signal . mBio. 2023 Aug 31;14(4):e0101023. doi: 10.1128/mbio.01010-23. Publication: Cummings DA …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate …
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Partnerships: Adopt-A-Genome
… available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ … al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 Whole genome sequence of the denitrifying … Berner, et. al.  2024.  Microbiology Resource Announcements 13 (10), e00517-24 Draft genome sequence of  Nitrobacter …
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Microbial Program
… to complete large-scale sequencing projects, including 10,000 Actinomycetota strains and 10,000 type strains. These … more about this work and further details on our Genomic Encyclopedia of Bacteria and Archaea . Exploration of … three domains of life. It provides tools for analyzing the functional capability of microbial communities based on …
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Fungal & Algal Program
… strains. This approach allows for the identification of key functional traits that have direct applications in bioenergy … for energy, agriculture, and the environment. … Genomic Encyclopedia of Fungi focuses on aspects of plant feedstock … biocontrol agents dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… in this hypersaline environment, which can range from 8% to 28% salinity. We have toxic metals, so these concentrations … And you have these different types of particulate like 2.5, 10 PPMs and just the size of the particle and how far they … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re …
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Examples: Successful LOIs & Submissions
… as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Large-Scale LOI #2 … CSP New Investigator Submission … CSP Functional Genomics Submission … FICUS Example #1 … FICUS …
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Publication Policy
… analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced … following the guidelines below.  … If you use data from 3 or fewer JGI proposals, include those DOIs in the auspice … Molecular Sciences Laboratory ( https://ror.org/04rc0xn13 ), which are DOE Office of Science User Facilities …
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Natural Prodcast Episode 16: Marcy Balunas
… strain and there have been years and years and years about 35-ish years, I think, now, studying Vibrio fischeri and … so there are– I hesitate to make a guess but maybe 50 to 100 different strains and they are in individual tubules.  … recent example of some of her work on molluscs and their cyanobacterial feeding preferences A 10″ Simple Rules” …
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Microbiome Data Science Team
… of host-virus interactions, the exploration of the functional dark matter as well as the development of novel … urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of … Acids Res. 43(14):6761-71 Kyrpides NC et al. (2014) Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of …
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