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… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … getting them out to you all. But for now, here is episode 10 of Natural Prodcast, the primer on genome mining. Hey, … reviews of genome mining: Ziemert, Alanjary, and Weber’s 2016 overview of genome mining (open access) The …

… target is based on 98% of the total available hours.   FY 2016 DOE Metrics 1,391 unique* JGI users in FY2016 … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … Targets Actual* Targets Actual 2007 40 39.22 8400 8609 2006 30 32.74 8400 8734 2005 28 33.63 8400 8760 * Reflects …

… Biology is currently experiencing a revolution brought on by rapid developments in genomics and … The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … of new viral genomes and their predicted hosts (Nature 2016, Science 2017, Nature Microbiology 2018), discovery of …

… Research in the Woyke laboratory focuses on the utility of … to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches in the phylogenetic … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … pairs. It was not linear, like Streptomyces , but circular. 10% of the genome encoded natural product pathways. Dan: … underwater vehicles. Brad: You did not! Alison: I did, like 2016, I think. Yes, it was just so funny to hear how they’re …

… Originally conceived as a UC Merced graduate student summer research experience at the JGI, the Genomics Internship … soon expanded to include undergraduate students. To date, more than 90 UC Merced students have contributed to the research of numerous JGI scientists. Interns say their …

… Research in the Eloe-Fadrosh group focuses on using … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value to improving our …

… led a team that  identified a protein , PtrbHLH011, within poplar involved in plant growth, lignin production, and disease resistance.  The Impact With increased lignin and iron, … Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … of comparative genomic analysis Expose students to peer review process, conveys responsibility and accountability …

… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … So they’re in the picomolar range. ALISON: Picomole… is [10 to the] minus twelve, right? BEN: Yeah, yeah. Well, we … collection we have here – all of them were collected before 2016, before that true enforcement of the Nagoya protocol. …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … And I set that up. And we finally got that to work 10 years later. But in the meantime there, we had people … And I thought, well, I know that we can do this. So in 2006 was when I started our cave-based natural product …

… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … Nature . The mushroom has a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its … the fungal portal MycoCosm, many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the …