Results
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … resequencing, RNA sequencing and epigenomics. Expansion of sequence space: The JGI generates reference genomes from …
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… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … al. (2015) Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria. …
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… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … biological inference. … Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus …
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The CSP New Investigator Call is for investigators and research … initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead … the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …
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… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …
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… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … out introns and dealing with, you know, weirdness in the sequence. You know, some clusters are not clustered… … it so easily with fungi. So… NANCY: Yeah, I don’t know why. For example, with that – actually there’s a good talk …
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Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … for sustainable growth of biofuel feedstock and fungi, as symbionts, pathogens, and biocontrol agents dramatically … The 1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …
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When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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… the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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… tell us about this squid-microbe relationship. Or is it a microbial community with microbial community relationship? … does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …
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… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language of microbial cell-cell communication. And he told us about his … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. …
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… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …
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