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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … using advanced sequencing technologies to explore microbial diversity — with an emphasis on bacteria and archaea, and … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses several … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …

… least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the … UGA-Langebio in Irapuato, Mexico. His interests are in microbial diversity and evolution, particularly as how …

The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of microbial …

Below is a brief description of the process needed to prepare and ship samples for … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …