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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data such as inferred …

… development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols … JGI assembly tool meraculous. It is now available for both eukaryotic and microbial metagenome assemblies. It is also …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … and activity in natural environments. Integrating metatranscriptomes and metagenomes can, for instance, … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of …

Below is a brief description of the process needed to prepare and ship samples for … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is … list of projects that you are interested in, then click the blue “reports” button on the right side. The Project …

Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) … I request a culture/slant/DNA of an organism that has been sequenced at the JGI? … How do I check the current status of …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to scientists …

… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …

… more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …