Search

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review …

… the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is advancing … The  Open Green Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the … manipulation in the laboratory. Both germplasm (sequenced mutants and natural accessions) and protocols …

The User Support Analysis group provides computational analysis for new technology development and JGI user science … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … The team works hand in hand with the Project Management Office to help ensure the JGI’s genomic capabilities are …

… about the basics of genome mining, which is using DNA sequence to identify and interpret biosynthetic, secondary … and a lot of the really important recent events in data analysis and secondary metabolism over the last decade or … biological perspective, like what was this bacterium, and why did your group want to study it? Marnix Medema: You mean …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger … take to improve on the data side of things and sequencing analysis side of things to really start to be able to …

… tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… cutting-edge sequencing technologies and advanced genomic analysis to explore the rich diversity of fungi and algae. … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to …