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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and … into bioenergy and bioproducts. The program’s fungal genomics research explores new metabolic processes and …
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Fungal & Algal Program User Advisory Committee
The Fungal & Algal Program Advisory Committees is chartered by … scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs’ …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… itself medicine, but the coding within the DNA codes for proteins that do the chemistry that put molecules together … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you …
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Partnerships: Myco-Ed
… that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is … 300+ students 800+ iNaturalist observations All MycoEd protocols, course materials and bioinformatics exercises are … through the links below. Naturalist Myco Ed Fungal Genomics Education Project MycoCosm MycoEd group page …
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Plant Program
… to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … including deep learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional … on Phytozome … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the …
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Mission
… and resources. Our vision is to lead genomic innovation for a sustainable bioeconomy. ALL PROPOSALS must support the … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, … development. Develop an understanding of microbial and fungal metabolism necessary to design communities, new …
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Natural Prodcast Episode 13: Francisco Barona Goméz
Yeah, so any metabolite, produced by bacterial or fungal metabolism by microbes, will have a functional role. … be the amino acid that is relevant for the synthesis of proteins, and will more often end up in the active site of an … I think the important thing to remember is that, thanks to genomics, we now know that it is very hard to find stuff …
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Natural Prodcast Episode 2: The Primer, Part 2
They might have enough nutrients, but they might want to protect those nutrients with antibiotics. They might need to … like a bunch of colonies on a petri dish. It’s a black and white photo. It almost looks like the moon, because you have … of weird growths on livestock due to you know, bacterial or fungal infections. Yeah, okay. So he identified these things …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these …
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Plant-Microbial Interactions Group
… diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, including … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist …
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Natural Prodcast Episode 11: Marnix Medema
Master’s student at the University of Groningen and then I wrote my own grant proposal in the hope that it would get … Marnix Medema: Yeah, exactly. There is no black and white in clustering in general in computer science. Dan … are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …
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