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Natural Prodcast Episode 10: A Primer on Genome Mining
… I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … and do some really complicated carbon skeleton rearrangements, chemistry that we probably don’t [need to] get … machine learning really would help distinguish and predict novel gene clusters. DAN UDWARY: Yeah, it certainly could. …
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Partnerships: Adopt-A-Genome
… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … recruit new talent for biosciences.  Adopt-a-Genome has: ~20 faculty from institutions across the country Efforts in ongoing … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic …
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Natural Prodcast Episode 20: Brian Bachmann
… our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and … in order to put them together to build pathways, to make novel compounds, or to find analogs. And that was Warp …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a … for amplifying the JGI’s impact. Data generated from a single investment will be reused for further … upgrades . We regret any inconvenience. Effective July 27, 2026, the JGI will move to a new login service, requiring …
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JGI@25
… Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable … Integrative Genomics Building was painted by Berkeley-based artist Nigel Sussman and dedicated at our 2022 Annual …
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JGI Mural
… The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic … for the JGI’s 25th anniversary and done by Berkeley-based artist Nigel Sussman. It was dedicated at the 2022 JGI Annual Meeting. …
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Metagenome Program
… Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … drive innovations that could advance our understanding of Earth’s ecosystems. … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom …
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New Lineages of Life Group
… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and … in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … and complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables …
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Microbiome Data Science Team
… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … with recent computational technology advances in management, processing and visualization of “big data,” and … is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology into …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge … The program provides high-quality, large-scale genomic data to advance microbial research that drives … solutions in energy, agriculture and ecosystem management. … in particular to study inter-organismal interactions. Novel approaches are being explored to predict microbial …
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