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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) … target is based on 98% of the total available hours.   FY 2015 DOE Metrics There were 958 unique* JGI users in FY2015 … for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress developing …
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How to Submit Sequencing Samples
… includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. … Weight DNA extraction and quality control (from PacBio) 2) Review guidelines detailing quantity and quality … information is included. Please retain your carrier’s tracking information. JGI Shipping Checklist International …
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Natural Prodcast Episode 5: Brad Moore
… enjoyed what he was doing so I wanted to be part of that discovery, and that magic that he was showing, and in his … And the list pretty much goes on. We’re looking at, now, diatoms and golden algae, and, so, really trying to … has been a lot of fun for us in recent years. Started in 2015, when two things happened. One, a new graduate student …
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New Lineages of Life Group
Our research is focused on the discovery and characterization of novel bacterial, archaeal and … available at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of … Microbiology. 18 (8), 2326-2342 Schulz and Horn (2015) Intranuclear bacteria: inside the cellular control …
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Microbiome Data Science Team
… is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology into … and visualization of big data. … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global … springs.  Nature Commun. 7:10476 Varghese NJ,  et al. (2015) Microbial species delineation using whole genome …
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Microbial Program
… linking strain-level genetic variation to ecological niche adaptations.  Single cell sequencing approaches are also … are derived from isolates and single cells. This effort uncovers novel genes, protein families, and pathways, …
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Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
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Plant Program
… and bolster agricultural resilience. The program’s discoveries support a plant based bioeconomy where plants are a … across JGI Plant Flagship speciesspecies, using deep-coverage RNA-seq analyzed in a consistant computational … application that produces high-quality de novo assemblies for very large-scale single genomes, based on the …
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The diatom Fragilariopsis cylindrus: A model alga to understand cold‐adapted life
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Natural Prodcast Episode 2: The Primer, Part 2
… to the second episode of the Natural Prodcast. This is part 2 of our “primer” episode, so if you ended up here somehow … a little bit more giving. DAN: Alright, so I think we’ve covered a little bit about why they’re important. But one of … has been … not dominated by, but driven by drug discovery. We know that many natural product molecules are …
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Natural Prodcast Episode 17: Cassandra Quave
… a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and now COVID. We also … the convention went– since the protocol went into force in 2014. There’s now a website that has a lot of resources that … can place a pre-order for the paperback (available June 2022). You might also enjoy Foodie Pharmacology – a science …
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Publication Policy
DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of … of the paper. Auspice Statements Including appropriate tracking numbers is critical to facilitating the tracking of … U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.” … All publications using JGI data produced …
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